Expression Data Table

Microarray DNA Analysis

Genom 2005 presents the data in different colors for each signal. You have a quick overview of the data. A gene name and an accession number for each probeset is presented in each row.

Gene Expression Graph

This is a diagram with one array. It shows a bar for each probeset.
Gene Expression Grap
3D Microarray

3D View

You can display each signal on your array in a 3D view. When comparing it with another array, you can easily find interesting probesets. You can also sort the signals by gene function or gene location.

Chromosome Location

This view displays all probesets orders by their location on the chromosome.
Gene Chromosome Location
Gene Expression Process

Gene Expression Process

This screenshot shows a graph where every probeset is represented by a line. It shows the up/down regulation of a gene between different time.

Pathway View

This screenshot shows a loaded pathway which is directly combined with the array data you have loaded.
Pathway View
Pathway Editor

Pathway Editor

With this integrated map editor, you can easily create new pathways or edit an existing one.

Gene Function Prediction

Often you have no information about a probeset because it's an EST or it has not been analyzed before. With this module you can get new information from probesets or custom sequences over a BLAST search (online). Possible new gene functions will then be shown.
Function Prediction
Function Prediction Details

Function Prediction Details

Details about the function prediction.

PubMED Research

PubMED is the largest database in the world with medical articles (hosted on Ncbi website). This module searches that database and returns relevant results to the entered term (or gene).
PubMED Research
MeSH Research

MeSH Research

MeSH (Medical Subject Headings) provides ordered terms to improve PubMED searches for example.

Gene Network

The relationship of the genes described in the abstracts from PubMED are shown here as relationship diagram.
Gene Network
Gene Functions For Array

Gene functions for Microarray

This algorithm presents the data in a table with all the gene functions from the genes you previously filtered, or can be done for the whole array.

GeneOntology for an Array

This displays the gene functions in a GeneOntology like view.
Go - Gene Ontology Array Listing
Probeset Info

Probeset Information

The gene information dialog. Here you get more detail information from the searched query like sequence, description and more.

Probeset Details

In this screenshot, you can directly access the links for more information about your query. Unlike in other programs you can click on a link and directly access the result page without filling out web forms.
Probeset Details
Probeset Functions In Go Tree

Functions for Probeset

Another GeneOntology graph of the gene functions from the gene.

Internet Research

In this screenshot you can see direct links for more information about your query. Unlike in other programs you can click on a link and get directly to the result page without filling out web forms.
Internet Research
Cluster View

Cluster View

This cluster can be made easily. It shows the most equal values paired together in a graph.

Scatterplot

Another view from the cluster algorithm.
Scatterplot